Detailed information of SNP:
|
SNP ID:
sf0803868826(Gbrowse)
Chromosome: chr08 Position: 3868826 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 61.32% | 38.68% |
| All Indica | 795 | 78.11% | 21.89% |
| All Japonica | 496 | 29.64% | 70.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 210 | 36.19% | 63.81% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 36.42% | 63.58% |
| Tropical Japonica | 93 | 15.05% | 84.95% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803868826 | G->A | INTERGENIC | None |