Detailed information of SNP:
|
SNP ID:
sf0803944809(Gbrowse)
Chromosome: chr08 Position: 3944809 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 64.33% | 35.67% |
| All Indica | 795 | 64.91% | 35.09% |
| All Japonica | 495 | 63.23% | 36.77% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 42.13% | 57.87% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 51.64% | 48.36% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803944809 | G->T | INTERGENIC | None |