Detailed information of SNP:
|
SNP ID:
sf0803967577(Gbrowse)
Chromosome: chr08 Position: 3967577 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 96.05% | 3.95% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 445 | 88.54% | 11.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 290 | 83.79% | 16.21% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803967577 | C->T | LOC_Os08g07090(LOC_Os08g07090.1) | INTRON |