Detailed information of SNP:
|
SNP ID:
sf0803975103(Gbrowse)
Chromosome: chr08 Position: 3975103 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 65.44% | 34.56% |
| All Indica | 795 | 77.74% | 22.26% |
| All Japonica | 497 | 43.66% | 56.34% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 212 | 35.38% | 64.62% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 335 | 57.61% | 42.39% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0803975103 | A->G | LOC_Os08g07100(LOC_Os08g07100.1) | INTRON |