Detailed information of SNP:
|
SNP ID:
sf0804003564(Gbrowse)
Chromosome: chr08 Position: 4003564 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 51.98% | 48.02% |
| All Indica | 797 | 26.22% | 73.78% |
| All Japonica | 494 | 98.58% | 1.42% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 374 | 7.49% | 92.51% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 210 | 16.19% | 83.81% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804003564 | A->T | LOC_Os08g07150(LOC_Os08g07150.1) | INTRON |