Detailed information of SNP:
|
SNP ID:
sf0804006004(Gbrowse)
Chromosome: chr08 Position: 4006004 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 67.77% | 32.23% |
| All Indica | 797 | 51.94% | 48.06% |
| All Japonica | 495 | 98.18% | 1.82% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 374 | 58.56% | 41.44% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 210 | 22.38% | 77.62% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804006004 | C->T | INTERGENIC | None |