Detailed information of SNP:
|
SNP ID:
sf0804048855(Gbrowse)
Chromosome: chr08 Position: 4048855 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1311 | 95.88% | 4.12% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 390 | 86.41% | 13.59% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 266 | 93.23% | 6.77% |
| Tropical Japonica | 70 | 68.57% | 31.43% |
| Japonica Intermediate | 54 | 75.93% | 24.07% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804048855 | G->A | INTERGENIC | None |