Detailed information of SNP:
|
SNP ID:
sf0804052859(Gbrowse)
Chromosome: chr08 Position: 4052859 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 68.64% | 31.36% |
| All Indica | 799 | 56.07% | 43.93% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 58.13% | 41.87% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 211 | 32.23% | 67.77% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804052859 | T->C | LOC_Os08g07260(LOC_Os08g07260.1) | Synonymous |