Detailed information of SNP:
|
SNP ID:
sf0804090301(Gbrowse)
Chromosome: chr08 Position: 4090301 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 73.19% | 26.81% |
| All Indica | 796 | 60.55% | 39.45% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 65 | 32.31% | 67.69% |
| Indica I | 372 | 59.41% | 40.59% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 211 | 44.55% | 55.45% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804090301 | C->T | INTERGENIC | None |