Detailed information of SNP:
|
SNP ID:
sf0804122264(Gbrowse)
Chromosome: chr08 Position: 4122264 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 59.81% | 40.19% |
| All Indica | 762 | 42.13% | 57.87% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 347 | 34.58% | 65.42% |
| Indica II | 211 | 63.03% | 36.97% |
| Indica Intermediate | 204 | 33.33% | 66.67% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804122264 | G->A | LOC_Os08g07360(LOC_Os08g07360.1) | INTRON |