Detailed information of SNP:
|
SNP ID:
sf0804122289(Gbrowse)
Chromosome: chr08 Position: 4122289 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 92.59% | 7.41% |
| All Indica | 760 | 87.11% | 12.89% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 354 | 87.85% | 12.15% |
| Indica II | 203 | 84.24% | 15.76% |
| Indica Intermediate | 203 | 88.67% | 11.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804122289 | C->T | LOC_Os08g07360(LOC_Os08g07360.1) | INTRON |