Detailed information of SNP:
|
SNP ID:
sf0804123684(Gbrowse)
Chromosome: chr08 Position: 4123684 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 61.12% | 38.88% |
| All Indica | 779 | 44.16% | 55.84% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 360 | 36.94% | 63.06% |
| Indica II | 211 | 66.82% | 33.18% |
| Indica Intermediate | 208 | 33.65% | 66.35% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804123684 | A->G | INTERGENIC | None |