Detailed information of SNP:
|
SNP ID:
sf0804145571(Gbrowse)
Chromosome: chr08 Position: 4145571 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 78.32% | 21.68% |
| All Indica | 795 | 68.05% | 31.95% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 64 | 56.25% | 43.75% |
| Indica I | 371 | 50.40% | 49.60% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804145571 | A->G | INTERGENIC | None |