Detailed information of SNP:
|
SNP ID:
sf0804178430(Gbrowse)
Chromosome: chr08 Position: 4178430 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 76.93% | 23.07% |
| All Indica | 796 | 60.93% | 39.07% |
| All Japonica | 495 | 98.59% | 1.41% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 43.05% | 56.95% |
| Indica II | 213 | 79.34% | 20.66% |
| Indica Intermediate | 209 | 74.16% | 25.84% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804178430 | T->C | INTERGENIC | None |