Detailed information of SNP:
|
SNP ID:
sf0804207303(Gbrowse)
Chromosome: chr08 Position: 4207303 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 68.22% | 31.78% |
| All Indica | 799 | 56.57% | 43.43% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 58.93% | 41.07% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 33.18% | 66.82% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804207303 | T->C | INTERGENIC | None |