Detailed information of SNP:
|
SNP ID:
sf0804260003(Gbrowse)
Chromosome: chr08 Position: 4260003 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1238 | 74.07% | 25.93% |
| All Indica | 783 | 81.99% | 18.01% |
| All Japonica | 337 | 49.55% | 50.45% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 94.62% | 5.38% |
| Indica II | 202 | 48.02% | 51.98% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 221 | 44.34% | 55.66% |
| Tropical Japonica | 69 | 55.07% | 44.93% |
| Japonica Intermediate | 47 | 65.96% | 34.04% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 78.38% | 21.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804260003 | T->A | INTERGENIC | None |