Detailed information of SNP:
|
SNP ID:
sf0804276604(Gbrowse)
Chromosome: chr08 Position: 4276604 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 62.13% | 37.87% |
| All Indica | 798 | 94.99% | 5.01% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804276604 | T->C | INTERGENIC | None |