Detailed information of SNP:
|
SNP ID:
sf0804297335(Gbrowse)
Chromosome: chr08 Position: 4297335 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 53.61% | 46.39% |
| All Indica | 797 | 87.83% | 12.17% |
| All Japonica | 495 | 2.83% | 97.17% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 209 | 83.25% | 16.75% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 92 | 5.43% | 94.57% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804297335 | G->A | INTERGENIC | None |