Detailed information of SNP:
|
SNP ID:
sf0804307212(Gbrowse)
Chromosome: chr08 Position: 4307212 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 77.97% | 22.03% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 494 | 48.58% | 51.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 332 | 51.20% | 48.80% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804307212 | A->G | INTERGENIC | None |