Detailed information of SNP:
|
SNP ID:
sf0804308411(Gbrowse)
Chromosome: chr08 Position: 4308411 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 77.31% | 22.69% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 497 | 50.70% | 49.30% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 48.06% | 51.94% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804308411 | C->T | INTERGENIC | None |