Detailed information of SNP:
|
SNP ID:
sf0804310748(Gbrowse)
Chromosome: chr08 Position: 4310748 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1321 | 91.82% | 8.18% |
| All Indica | 790 | 99.87% | 0.13% |
| All Japonica | 411 | 74.94% | 25.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 270 | 78.52% | 21.48% |
| Tropical Japonica | 79 | 53.16% | 46.84% |
| Japonica Intermediate | 62 | 87.10% | 12.90% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804310748 | T->C | INTERGENIC | None |