Detailed information of SNP:
|
SNP ID:
sf0804311177(Gbrowse)
Chromosome: chr08 Position: 4311177 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 80.34% | 19.66% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 52.52% | 47.48% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 49.55% | 50.45% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804311177 | T->C | INTERGENIC | None |