Detailed information of SNP:
|
SNP ID:
sf0804314834(Gbrowse)
Chromosome: chr08 Position: 4314834 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 77.64% | 22.36% |
| All Indica | 798 | 91.48% | 8.52% |
| All Japonica | 497 | 50.91% | 49.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 48.36% | 51.64% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804314834 | A->G | INTERGENIC | None |