Detailed information of SNP:
|
SNP ID:
sf0804326460(Gbrowse)
Chromosome: chr08 Position: 4326460 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 76.59% | 23.41% |
| All Indica | 799 | 89.74% | 10.26% |
| All Japonica | 496 | 51.21% | 48.79% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 334 | 48.50% | 51.50% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804326460 | A->G | LOC_Os08g07730(LOC_Os08g07730.1) | INTRON |