Detailed information of SNP:
|
SNP ID:
sf0804326475(Gbrowse)
Chromosome: chr08 Position: 4326475 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 81.75% | 18.25% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 497 | 53.12% | 46.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 50.15% | 49.85% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804326475 | T->C | LOC_Os08g07730(LOC_Os08g07730.1) | INTRON |