Detailed information of SNP:
|
SNP ID:
sf0804326526(Gbrowse)
Chromosome: chr08 Position: 4326526 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 80.48% | 19.52% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 52.72% | 47.28% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 49.85% | 50.15% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804326526 | C->T | LOC_Os08g07730(LOC_Os08g07730.1) | INTRON |