Detailed information of SNP:
|
SNP ID:
sf0804342796(Gbrowse)
Chromosome: chr08 Position: 4342796 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 61.87% | 38.13% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804342796 | T->C | INTERGENIC | None |