Detailed information of SNP:
|
SNP ID:
sf0804345145(Gbrowse)
Chromosome: chr08 Position: 4345145 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 67.85% | 32.15% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 490 | 12.45% | 87.55% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 328 | 13.41% | 86.59% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804345145 | T->A | LOC_Os08g07760(LOC_Os08g07760.1) | INTRON |