Detailed information of SNP:
|
SNP ID:
sf0804360684(Gbrowse)
Chromosome: chr08 Position: 4360684 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 91.03% | 8.97% |
| All Indica | 799 | 93.12% | 6.88% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804360684 | T->C | INTERGENIC | None |