Detailed information of SNP:



SNP ID: sf0804364147(Gbrowse)

Chromosome: chr08

Position: 4364147
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1417 65.42% 34.58%
All Indica799 97.75% 2.25%
All Japonica495 6.67% 93.33%
Aus67 98.51% 1.49%
Indica I375 95.73% 4.27%
Indica II213 99.53% 0.47%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica333 7.51% 92.49%
Tropical Japonica94 6.38% 93.62%
Japonica Intermediate68 2.94% 97.06%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 80.95% 19.05%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0804364147 A->G LOC_Os08g07790(LOC_Os08g07790.1) UTR_3_PRIME