Detailed information of SNP:
|
SNP ID:
sf0804364147(Gbrowse)
Chromosome: chr08 Position: 4364147 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 65.42% | 34.58% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 495 | 6.67% | 93.33% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 7.51% | 92.49% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804364147 | A->G | LOC_Os08g07790(LOC_Os08g07790.1) | UTR_3_PRIME |