Detailed information of SNP:
|
SNP ID:
sf0804418901(Gbrowse)
Chromosome: chr08 Position: 4418901 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 87.84% | 12.16% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 493 | 66.53% | 33.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 66.57% | 33.43% |
| Tropical Japonica | 92 | 83.70% | 16.30% |
| Japonica Intermediate | 66 | 42.42% | 57.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804418901 | G->A | INTERGENIC | None |