Detailed information of SNP:
|
SNP ID:
sf0804419929(Gbrowse)
Chromosome: chr08 Position: 4419929 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 73.48% | 26.52% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 497 | 29.78% | 70.22% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 28.36% | 71.64% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804419929 | G->A | INTERGENIC | None |