Detailed information of SNP:
|
SNP ID:
sf0804425638(Gbrowse)
Chromosome: chr08 Position: 4425638 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 96.31% | 3.69% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 59 | 25.42% | 74.58% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804425638 | G->A | LOC_Os08g07870(LOC_Os08g07870.1) | Synonymous |