Detailed information of SNP:
|
SNP ID:
sf0804434059(Gbrowse)
Chromosome: chr08 Position: 4434059 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 91.58% | 8.42% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 491 | 77.60% | 22.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 80.78% | 19.22% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 66 | 40.91% | 59.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804434059 | A->G | INTERGENIC | None |