Detailed information of SNP:
|
SNP ID:
sf0804451576(Gbrowse)
Chromosome: chr08 Position: 4451576 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 96.33% | 3.67% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 469 | 89.98% | 10.02% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 318 | 100.00% | 0.00% |
| Tropical Japonica | 85 | 48.24% | 51.76% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804451576 | G->A | INTERGENIC | None |