Detailed information of SNP:
|
SNP ID:
sf0804493514(Gbrowse)
Chromosome: chr08 Position: 4493514 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 60.03% | 39.97% |
| All Indica | 798 | 92.48% | 7.52% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 212 | 80.66% | 19.34% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804493514 | C->T | LOC_Os08g07950(LOC_Os08g07950.1) | Non-Synonymous SNP |