Detailed information of SNP:
|
SNP ID:
sf0804501902(Gbrowse)
Chromosome: chr08 Position: 4501902 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 84.26% | 15.74% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 489 | 60.53% | 39.47% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 65.47% | 34.53% |
| Tropical Japonica | 91 | 26.37% | 73.63% |
| Japonica Intermediate | 65 | 83.08% | 16.92% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804501902 | T->C | INTERGENIC | None |