Detailed information of SNP:
|
SNP ID:
sf0804506505(Gbrowse)
Chromosome: chr08 Position: 4506505 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 96.10% | 3.90% |
| All Indica | 798 | 95.86% | 4.14% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 72.58% | 27.42% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804506505 | A->G | LOC_Os08g07970(LOC_Os08g07970.3) | INTRON |
| sf0804506505 | A->G | LOC_Os08g07970(LOC_Os08g07970.1) | INTRON |
| sf0804506505 | A->G | LOC_Os08g07970(LOC_Os08g07970.2) | INTRON |