Detailed information of SNP:
|
SNP ID:
sf0804523153(Gbrowse)
Chromosome: chr08 Position: 4523153 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 62.81% | 37.19% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804523153 | G->A | LOC_Os08g08000(LOC_Os08g08000.1) | INTRON |