Detailed information of SNP:
|
SNP ID:
sf0804573684(Gbrowse)
Chromosome: chr08 Position: 4573684 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1355 | 67.60% | 32.40% |
| All Indica | 764 | 93.46% | 6.54% |
| All Japonica | 472 | 25.64% | 74.36% |
| Aus | 65 | 64.62% | 35.38% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 178 | 93.82% | 6.18% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 320 | 21.25% | 78.75% |
| Tropical Japonica | 89 | 16.85% | 83.15% |
| Japonica Intermediate | 63 | 60.32% | 39.68% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804573684 | A->T | LOC_Os08g08060(LOC_Os08g08060.1) | INTRON |