Detailed information of SNP:
|
SNP ID:
sf0804582375(Gbrowse)
Chromosome: chr08 Position: 4582375 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 69.40% | 30.60% |
| All Indica | 799 | 92.87% | 7.13% |
| All Japonica | 494 | 25.51% | 74.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 21.92% | 78.08% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804582375 | T->A | LOC_Os08g08070(LOC_Os08g08070.1) | UTR_3_PRIME |