Detailed information of SNP:
|
SNP ID:
sf0804588536(Gbrowse)
Chromosome: chr08 Position: 4588536 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 85.83% | 14.17% |
| All Indica | 784 | 96.68% | 3.32% |
| All Japonica | 497 | 79.68% | 20.32% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 196 | 95.92% | 4.08% |
| Temperate Japonica | 335 | 82.39% | 17.61% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804588536 | C->G | LOC_Os08g08080(LOC_Os08g08080.2) | INTRON |
| sf0804588536 | C->G | LOC_Os08g08080(LOC_Os08g08080.1) | INTRON |