Detailed information of SNP:
|
SNP ID:
sf0804648554(Gbrowse)
Chromosome: chr08 Position: 4648554 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 91.47% | 8.53% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 497 | 80.89% | 19.11% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 85.67% | 14.33% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804648554 | G->A | LOC_Os08g08170(LOC_Os08g08170.1) | INTRON |