Detailed information of SNP:
|
SNP ID:
sf0804649296(Gbrowse)
Chromosome: chr08 Position: 4649296 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 93.62% | 6.38% |
| All Indica | 796 | 98.62% | 1.38% |
| All Japonica | 493 | 85.19% | 14.81% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 97.31% | 2.69% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 88.62% | 11.38% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 67 | 52.24% | 47.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804649296 | C->T | LOC_Os08g08170(LOC_Os08g08170.1) | INTRON |