Detailed information of SNP:
|
SNP ID:
sf0804659477(Gbrowse)
Chromosome: chr08 Position: 4659477 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 60.40% | 39.60% |
| All Indica | 784 | 93.62% | 6.38% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 363 | 91.46% | 8.54% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804659477 | G->A | INTERGENIC | None |