Detailed information of SNP:
|
SNP ID:
sf0804697576(Gbrowse)
Chromosome: chr08 Position: 4697576 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 61.38% | 38.62% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 497 | 13.48% | 86.52% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 10.75% | 89.25% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804697576 | A->G | INTERGENIC | None |