Detailed information of SNP:
|
SNP ID:
sf0804698112(Gbrowse)
Chromosome: chr08 Position: 4698112 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 61.71% | 38.29% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 496 | 13.71% | 86.29% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 334 | 10.78% | 89.22% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804698112 | A->C | INTERGENIC | None |