Detailed information of SNP:
|
SNP ID:
sf0804718108(Gbrowse)
Chromosome: chr08 Position: 4718108 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 75.23% | 24.77% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 488 | 29.92% | 70.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 18.81% | 81.19% |
| Tropical Japonica | 85 | 48.24% | 51.76% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804718108 | A->G | LOC_Os08g08250(LOC_Os08g08250.1) | Non-Synonymous SNP |