Detailed information of SNP:
|
SNP ID:
sf0804721358(Gbrowse)
Chromosome: chr08 Position: 4721358 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 83.99% | 16.01% |
| All Indica | 794 | 85.89% | 14.11% |
| All Japonica | 494 | 87.65% | 12.35% |
| Aus | 52 | 42.31% | 57.69% |
| Indica I | 374 | 94.12% | 5.88% |
| Indica II | 210 | 63.81% | 36.19% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 89.55% | 10.45% |
| Tropical Japonica | 91 | 96.70% | 3.30% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804721358 | G->A | INTERGENIC | None |