Detailed information of SNP:
|
SNP ID:
sf0804723766(Gbrowse)
Chromosome: chr08 Position: 4723766 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 55.86% | 44.14% |
| All Indica | 797 | 79.42% | 20.58% |
| All Japonica | 497 | 22.94% | 77.06% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 41.78% | 58.22% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 5.37% | 94.63% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804723766 | C->A | INTERGENIC | None |